ASpediaFI

DOI: 10.18129/B9.bioc.ASpediaFI    

This is the development version of ASpediaFI; for the stable release version, see ASpediaFI.

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Bioconductor version: Development (3.11)

This package provides functionalities for a systematic and integrative analysis of alternative splicing events and their functional interactions.

Author: Doyeong Yu, Kyubin Lee, Daejin Hyung, Soo Young Cho, Charny Park

Maintainer: Doyeong Yu <nachoryu at ncc.re.kr>

Citation (from within R, enter citation("ASpediaFI")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ASpediaFI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpediaFI")

 

PDF R Script ASpediaFI.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews AlternativeSplicing, Annotation, Coverage, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkInference, Pathways, Reactome, Sequencing, Software, Transcription, Visualization
Version 1.1.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL-3
Depends R (>= 3.6.0), SummarizedExperiment, ROCR
Imports BiocParallel, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, IVAS, Rsamtools, biomaRt, limma, S4Vectors, stats, DRaWR, GenomeInfoDb, Gviz, Matrix, dplyr, fgsea, reshape2, igraph, graphics, e1071, methods, rtracklayer, scales, grid, ggplot2, mGSZ, utils
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/nachoryu/ASpediaFI
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ASpediaFI_1.1.0.tar.gz
Windows Binary ASpediaFI_1.1.0.zip
Mac OS X 10.11 (El Capitan) ASpediaFI_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ASpediaFI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ASpediaFI
Package Short Url https://bioconductor.org/packages/ASpediaFI/
Package Downloads Report Download Stats

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