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| exfdr | Example of twilight result |
| expval | Example of twilight.pval result |
| plot.twilight | Plot function for twilight objects |
| print.twilight | Print function for twilight objects |
| twilight | Estimation of the local false discovery rate |
| twilight.combi | All permutations of a binary vector |
| twilight.filtering | Permutation filtering |
| twilight.permute.pair | Permutation matrix of paired class labels |
| twilight.permute.unpair | Permutation matrix of unpaired class labels |
| twilight.pval | Compute p-values from expression sets |
| twilight.teststat | Interface to the test statistics provided within 'twilight' |