A.csr |
~~data-name / kind ... |
accessMat |
matrix utilities for ontoTools. |
accessMat-method |
Class "ontology" wraps a rooted DAG with some ontology metadata |
adjMat |
Class "compoundGraph" list representation of multiple graph::graph objects |
adjMat-method |
Class "compoundGraph" list representation of multiple graph::graph objects |
AMN |
Class "namedSparse" adds margin names to sparse matrices |
annoSource-class |
Vocabulary for genomic data integration |
annotationResource-class |
Vocabulary for genomic data integration |
Arith-method |
Class "namedSparse" adds margin names to sparse matrices |
as.matrix-method |
Class "namedSparse" adds margin names to sparse matrices |
as.matrix.ok |
Class "namedSparse" adds margin names to sparse matrices |
GDILabel |
Structures for working with formal nomenclatures |
GDILabel-class |
Vocabulary for genomic data integration |
GDIontology |
Structures for working with formal nomenclatures |
GDIontology-class |
Vocabulary for genomic data integration |
GDIplatform-class |
Vocabulary for genomic data integration |
GDI_NCIThesaurus |
Structures for working with formal nomenclatures |
getDefs |
Structures for working with formal nomenclatures |
getDefs-method |
Structures for working with formal nomenclatures |
getMatrix |
matrix utilities for ontoTools. |
getMatrix-method |
Class "rootedDAG" |
getTerms |
Structures for working with formal nomenclatures |
getTerms-method |
Vocabulary for genomic data integration |
go1.15DAG |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
GOMF1.15 |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
gomfAmat |
sparse matrix representing accessibilities of terms in GO MF graph; graph also documented here |
goMFamat.1.15 |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
goMFamat.1.4 |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
goMFgraph.1.15 |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
goMFgraph.1.4 |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
goMFgraphDemo |
sparse matrix representing accessibilities of terms in GO MF graph; graph also documented here |
grep-method |
Vocabulary for genomic data integration |
grList |
Class "compoundGraph" list representation of multiple graph::graph objects |
grList-method |
Class "compoundGraph" list representation of multiple graph::graph objects |
litObj |
litOnto: graph illustrating the ontology concept; litObj: matrix illustrating the object-ontology mapping |
litOnto |
litOnto: graph illustrating the ontology concept; litObj: matrix illustrating the object-ontology mapping |
LL2GOMFcp.1.15 |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
LL2GOMFcp.1.4 |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
LL2GOMFooc1.15 |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
LL2GOMFooMap.1.15 |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
LL2GOMFooMap.1.4 |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
LLGOMFcp |
resources saved for computation of concept probabilities for GO MF terms applied to human LocusLink entries |
makeNamedSparse |
Class "namedSparse" adds margin names to sparse matrices |
makeOntology |
Class "ontology" wraps a rooted DAG with some ontology metadata |
makeOOC |
Class "OOC" object-ontology complex |
makeSparseZero |
Class "namedSparse" adds margin names to sparse matrices |
mapNamesInds |
Class "namedSparse" adds margin names to sparse matrices |
mat |
Class "namedSparse" adds margin names to sparse matrices |
mat-method |
Class "namedSparse" adds margin names to sparse matrices |
maxval |
Class "namedSparse" adds margin names to sparse matrices |
maxval-method |
Class "namedSparse" adds margin names to sparse matrices |
mkNS |
Class "namedSparse" adds margin names to sparse matrices |
ontoDepth |
tools for manipulating depth concepts for rooted DAGs |
ontology |
Class "ontology" wraps a rooted DAG with some ontology metadata |
ontology-class |
Class "ontology" wraps a rooted DAG with some ontology metadata |
ontology-method |
Class "OOC" object-ontology complex |
OOC-class |
Class "OOC" object-ontology complex |
OOmap |
Class "OOC" object-ontology complex |
OOmap-method |
Class "OOC" object-ontology complex |
ooMapLL2GOMFdemo |
object-term mapping for human locuslink entries and GO MF |
otkvEnv2namedSparse |
obtain sparse matrix representation of key-value structures |
otkvList2namedSparse |
obtain sparse matrix representation of key-value structures |
OVersion |
Class "ontology" wraps a rooted DAG with some ontology metadata |
OVersion-method |
Class "ontology" wraps a rooted DAG with some ontology metadata |
semsim |
Compute semantic similarity measure for terms in an object-ontology complex |
SGDIvocab |
Vocabulary for genomic data integration |
show-method |
Structures for working with formal nomenclatures |
show-method |
Class "OOC" object-ontology complex |
show-method |
Vocabulary for genomic data integration |
show-method |
Class "namedSparse" adds margin names to sparse matrices |
show-method |
Class "ontology" wraps a rooted DAG with some ontology metadata |
show-method |
Class "taggedHierNomenclature" ~~~ |
STMA |
Vocabulary from statistics theory and methods abstracts |
subsumers |
Compute semantic similarity measure for terms in an object-ontology complex |
sumSp |
Class "namedSparse" adds margin names to sparse matrices |
sumSpSLOW |
Class "namedSparse" adds margin names to sparse matrices |
symMapping-class |
Vocabulary for genomic data integration |