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A B C D E F G H I J K L M N P Q R S T U V W X misc
| flowCore-package | Provides S4 data structures and basic infrastructure and functions to deal with flow cytometry data. |
| action | Class "view" |
| action-method | Class "view" |
| actionItem-class | Class "actionItem" |
| actions | Class "workFlow" |
| actions-method | Class "workFlow" |
| add | Class "workFlow" |
| add-method | Class "normalization" |
| add-method | Class "subsetting" |
| add-method | Class "workFlow" |
| alias | Class "view" |
| alias-method | Class "actionItem" |
| alias-method | Class "view" |
| alias-method | Class "workFlow" |
| arcsinhTransform | Create the definition of an arcsinh transformation function (base specified by user) to be applied on a data set |
| as.data.frame.manyFilterResult | Class "manyFilterResult" |
| asinht | Class "asinht" |
| asinht-class | Class "asinht" |
| assign | Class "fcReference" and its subclasses |
| assign-method | Class "workFlow" |
| biexponentialTransform | Compute a transform using the 'biexponential' function |
| booleanGate,filter-class | A class for representing filtering operations to be applied to flow data. |
| boundaryFilter | Class "boundaryFilter" |
| boundaryFilter-class | Class "boundaryFilter" |
| c-method | Class "transformList" |
| call-method | Filter FCS files |
| cbind2-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| char2ExpressionFilter | Class "expressionFilter" |
| character-method | Filter FCS files |
| characterOrTransformation-class | Class "characterOrTransformation" |
| cleanup | Read an FCS file |
| coerce | Convert an object to another class |
| coerce-method | Convert an object to another class |
| coerce-method | Take the intersection of two filters |
| coerce-method | Class "filterSummary" |
| colnames | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| colnames-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| colnames-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| colnames-method | Class "transformList" |
| colnames<- | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| colnames<--method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| colnames<--method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| compensate | Class "compensation" |
| compensate-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| compensate-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| compensateActionItem | Class "compensateActionItem" |
| compensateActionItem-class | Class "compensateActionItem" |
| compensatedParameter | Class "compensatedParameter" |
| compensatedParameter-class | Class "compensatedParameter" |
| compensateView | Class "compensateView" |
| compensateView-class | Class "compensateView" |
| compensation | Class "compensation" |
| compensation-class | Class "compensation" |
| complementFilter-class | Class "setOperationFilter" |
| concreteFilter-class | Class "concreteFilter" |
| curv1Filter | Class "curv1Filter" |
| curv1Filter-class | Class "curv1Filter" |
| curv2Filter | Class "curv2Filter" |
| curv2Filter-class | Class "curv2Filter" |
| Data | Class "view" |
| Data-method | Class "view" |
| decisionTreeGate,filter-class | A class for representing filtering operations to be applied to flow data. |
| description | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| description-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| description<--method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| dg1polynomial | Class "dg1polynomial" |
| dg1polynomial-class | Class "dg1polynomial" |
| dim | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| dim-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| each_col | Method to apply functions over flowFrame margins |
| each_col-method | Method to apply functions over flowFrame margins |
| each_col-methods | Method to apply functions over flowFrame margins |
| each_row | Method to apply functions over flowFrame margins |
| each_row-method | Method to apply functions over flowFrame margins |
| each_row-methods | Method to apply functions over flowFrame margins |
| EHtrans | Class "EHtrans" |
| EHtrans-class | Class "EHtrans" |
| ellipsoidGate | Class "ellipsoidGate" |
| ellipsoidGate,filter-class | A class for representing filtering operations to be applied to flow data. |
| ellipsoidGate-class | Class "ellipsoidGate" |
| estimateLogicle | Computes a transform using the 'logicle_transform' function |
| eval-method | Class "EHtrans" |
| eval-method | Class "asinht" |
| eval-method | Class "compensatedParameter" |
| eval-method | Class "dg1polynomial" |
| eval-method | Class "exponential" |
| eval-method | Class filterReference |
| eval-method | Class "hyperlog" |
| eval-method | Class "invsplitscale" |
| eval-method | Class "logarithm" |
| eval-method | Class "quadratic" |
| eval-method | Class "ratio" |
| eval-method | Class "sinht" |
| eval-method | Class "splitscale" |
| eval-method | Class "squareroot" |
| eval-method | Class "transformReference" |
| eval-method | Class "unitytransform" |
| exponential | Class "exponential" |
| exponential-class | Class "exponential" |
| expressionFilter | Class "expressionFilter" |
| expressionFilter-class | Class "expressionFilter" |
| exprs | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| exprs-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| exprs<- | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| exprs<--method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| fcActionReference | Class "fcReference" and its subclasses |
| fcActionReference-class | Class "fcReference" and its subclasses |
| fcAliasReference | Class "fcReference" and its subclasses |
| fcAliasReference-class | Class "fcReference" and its subclasses |
| fcCompensateReference | Class "fcReference" and its subclasses |
| fcCompensateReference-class | Class "fcReference" and its subclasses |
| fcDataReference | Class "fcReference" and its subclasses |
| fcDataReference-class | Class "fcReference" and its subclasses |
| fcFilterReference | Class "fcReference" and its subclasses |
| fcFilterReference-class | Class "fcReference" and its subclasses |
| fcFilterResultReference | Class "fcReference" and its subclasses |
| fcFilterResultReference-class | Class "fcReference" and its subclasses |
| fcNormalizationReference | Class "fcReference" and its subclasses |
| fcNormalizationReference-class | Class "fcReference" and its subclasses |
| fcNullReference | Class "fcReference" and its subclasses |
| fcNullReference-class | Class "fcReference" and its subclasses |
| fcReference | Class "fcReference" and its subclasses |
| fcReference-class | Class "fcReference" and its subclasses |
| fcStructureReference-class | Class "fcReference" and its subclasses |
| fcSubsettingReference | Class "fcReference" and its subclasses |
| fcSubsettingReference-class | Class "fcReference" and its subclasses |
| fcTransformReference | Class "fcReference" and its subclasses |
| fcTransformReference-class | Class "fcReference" and its subclasses |
| fcTreeReference | Class "fcReference" and its subclasses |
| fcTreeReference-class | Class "fcReference" and its subclasses |
| fcViewReference | Class "fcReference" and its subclasses |
| fcViewReference-class | Class "fcReference" and its subclasses |
| featureNames | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| featureNames-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| filter | Filter FCS files |
| filter,flowFrame,norm2Filter | Filter FCS files |
| filter,flowFrame,polygonGate | Filter FCS files |
| filter,flowFrame,rectangleGate | Filter FCS files |
| filter-class | A class for representing filtering operations to be applied to flow data. |
| filter-method | A class for representing filtering operations to be applied to flow data. |
| filter-method | Filter FCS files |
| filter-on-methods | Methods for Function %on% in Package 'flowCore' |
| filterDetails | Obtain details about a filter operation |
| filterDetails-method | Obtain details about a filter operation |
| filterDetails-methods | Obtain details about a filter operation |
| filterDetails<- | Obtain details about a filter operation |
| filterDetails<--method | Obtain details about a filter operation |
| filtergate,filter-class | A class for representing filtering operations to be applied to flow data. |
| filterList | Class "filterList" |
| filterList-class | Class "filterList" |
| filterReference | Class filterReference |
| filterReference-class | Class filterReference |
| filterReference-method | Class filterReference |
| filterReference-method | Class filterSet |
| filterResult | Class "filterResult" |
| filterResult-class | Class "filterResult" |
| filterResultList | Class "filterResultList" |
| filterResultList-class | Class "filterResultList" |
| filterSet | Class filterSet |
| filterSet-class | Class filterSet |
| filterSummary | Class "filterSummary" |
| filterSummary-class | Class "filterSummary" |
| filterSummaryList | Class "filterSummaryList" |
| filterSummaryList-class | Class "filterSummaryList" |
| flowCore | Provides S4 data structures and basic infrastructure and functions to deal with flow cytometry data. |
| flowFrame | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| flowFrame-class | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| flowSet | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| flowSet-class | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| formula-method | Filter FCS files |
| fsApply | Apply a Function over values in a flowSet |
| fsApply,flowSet,ANY | Apply a Function over values in a flowSet |
| fsApply-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| gate | Class "gateActionItem" |
| gate-method | Class "gateActionItem" |
| gateActionItem | Class "gateActionItem" |
| gateActionItem-class | Class "gateActionItem" |
| gateView | Class "gateView" |
| gateView-class | Class "gateView" |
| get | Class "fcReference" and its subclasses |
| get-method | Class "fcReference" and its subclasses |
| get-method | Class "workFlow" |
| GvHD | Extract of a Graft versus Host Disease monitoring experiment (Rizzieri et al., 2007) |
| head-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| hyperlog | Class "hyperlog" |
| hyperlog-class | Class "hyperlog" |
| identifier | Retrieve the GUID of flowCore objects |
| identifier-method | Class "actionItem" |
| identifier-method | Class "compensation" |
| identifier-method | Class "fcReference" and its subclasses |
| identifier-method | Class "filterList" |
| identifier-method | Class filterSet |
| identifier-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| identifier-method | Retrieve the GUID of flowCore objects |
| identifier-method | Class "normalization" |
| identifier-method | Class "subsetting" |
| identifier-method | Class "transformList" |
| identifier-method | Class "view" |
| identifier-methods | Retrieve the GUID of flowCore objects |
| identifier<- | Retrieve the GUID of flowCore objects |
| identifier<--method | Class "compensation" |
| identifier<--method | Filter FCS files |
| identifier<--method | Class "filterList" |
| identifier<--method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| identifier<--method | Retrieve the GUID of flowCore objects |
| identifier<--method | Class "normalization" |
| identifier<--method | Class "subsetting" |
| identifier<--method | Class "transformList" |
| initialize-method | Class "dg1polynomial" |
| initialize-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| initialize-method | Class "parameterFilter" |
| initialize-method | Class "ratio" |
| initialize-method | Class "singleParameterTransform" |
| intersectFilter-class | Class "setOperationFilter" |
| intersectFilter-method | Take the intersection of two filters |
| inverseLogicleTransform | Computes the inverse of the transform defined by the 'logicleTransform' function |
| invsplitscale | Class "invsplitscale" |
| invsplitscale-class | Class "invsplitscale" |
| isFCSfile | Read an FCS file |
| isNull | Class "fcReference" and its subclasses |
| isNull-method | Class "fcReference" and its subclasses |
| journal | Class "workFlow" |
| journal-method | Class "workFlow" |
| keyword | Methods to retrieve keywords of a flowFrame |
| keyword-method | Methods to retrieve keywords of a flowFrame |
| keyword-methods | Methods to retrieve keywords of a flowFrame |
| keyword<- | Methods to retrieve keywords of a flowFrame |
| keyword<--method | Methods to retrieve keywords of a flowFrame |
| kmeansFilter | Class "kmeansFilter" |
| kmeansFilter-class | Class "kmeansFilter" |
| length-method | Filter FCS files |
| length-method | Class filterReference |
| length-method | Class "filterSummary" |
| length-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| length-method | Class "kmeansFilter" |
| length-method | Class "logicalFilterResult" |
| length-method | Class "manyFilterResult" |
| length-method | Class "multipleFilterResult" |
| linearTransform | Create the definition of a linear transformation function to be applied on a data set |
| lnTransform | Create the definition of a ln transformation function (natural logarthim) to be applied on a data set |
| logarithm | Class "logarithm" |
| logarithm-class | Class "logarithm" |
| logicalFilterResult | Class "logicalFilterResult" |
| logicalFilterResult-class | Class "logicalFilterResult" |
| logicleTransform | Computes a transform using the 'logicle_transform' function |
| logTransform | Create the definition of a log transformation function (base specified by user) to be applied on a data set |
| ls | Class "workFlow" |
| ls-method | Class "workFlow" |
| manyFilterResult | Class "manyFilterResult" |
| manyFilterResult-class | Class "manyFilterResult" |
| mget | Class "workFlow" |
| mget-method | Class "workFlow" |
| multipleFilterResult | Class "multipleFilterResult" |
| multipleFilterResult-class | Class "multipleFilterResult" |
| name-method | Filter FCS files |
| names | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| names-method | Class "actionItem" |
| names-method | Class "filterResultList" |
| names-method | Class filterSet |
| names-method | Class "filterSummary" |
| names-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| names-method | Class "logicalFilterResult" |
| names-method | Class "manyFilterResult" |
| names-method | Class "multipleFilterResult" |
| names-method | Class "view" |
| names-method | Class "workFlow" |
| names<--method | Class "multipleFilterResult" |
| ncol | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| ncol-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| nodes-method | Class "workFlow" |
| norm2Filter | Class "norm2Filter" |
| norm2Filter,filter-class | A class for representing filtering operations to be applied to flow data. |
| norm2Filter-class | Class "norm2Filter" |
| normalization | Class "normalization" |
| normalization-class | Class "normalization" |
| normalize | Class "normalization" |
| normalize-method | Class "normalization" |
| normalizeActionItem | Class "normalizeActionItem" |
| normalizeActionItem-class | Class "normalizeActionItem" |
| normalizeView | Class "normalizeView" |
| normalizeView-class | Class "normalizeView" |
| nrow | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| nrow-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| parameterFilter-class | Class "parameterFilter" |
| parameters | Obtain information about parameters for flow cytometry objects. |
| parameters-class | Class "parameters" |
| parameters-method | Class "compensation" |
| parameters-method | Class "filterResultList" |
| parameters-method | Class "manyFilterResult" |
| parameters-method | Class "normalization" |
| parameters-method | Obtain information about parameters for flow cytometry objects. |
| parameters-method | Class "transformReference" |
| parameters<- | Obtain information about parameters for flow cytometry objects. |
| parameters<--method | Class "dg1polynomial" |
| parameters<--method | Obtain information about parameters for flow cytometry objects. |
| parameterTransform-class | Class "parameterTransform" |
| parent | Class "view" |
| parent-method | Class "actionItem" |
| parent-method | Class "view" |
| pData-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| pData<--method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| phenoData-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| phenoData<--method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| plot-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| plot-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| plot-method | Class "workFlow" |
| polygonGate | Class "polygonGate" |
| polygonGate,filter-class | A class for representing filtering operations to be applied to flow data. |
| polygonGate-class | Class "polygonGate" |
| polytopeGate | Define filter boundaries |
| polytopeGate-class | Define filter boundaries |
| print-method | Class "compensateActionItem" |
| print-method | Class "filterSummary" |
| print-method | Class "gateActionItem" |
| print-method | Class "normalizeActionItem" |
| print-method | Class "subsettingActionItem" |
| print-method | Class "transformActionItem" |
| print-method | Class "view" |
| quadGate | Class "quadGate" |
| quadGate-class | Class "quadGate" |
| quadratic | Class "quadratic" |
| quadratic-class | Class "quadratic" |
| quadraticTransform | Create the definition of a quadratic transformation function to be applied on a data set |
| randomFilterResult-class | Class "randomFilterResult" |
| range | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| range-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| ratio | Class "ratio" |
| ratio-class | Class "ratio" |
| rbind2,flowSet,missing | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| rbind2-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| read.FCS | Read an FCS file |
| read.FCSheader | Read the TEXT section of a FCS file |
| read.flowSet | Read a set of FCS files |
| rectangleGate | Class "rectangleGate" |
| rectangleGate,filter-class | A class for representing filtering operations to be applied to flow data. |
| rectangleGate-class | Class "rectangleGate" |
| Rm | Class "fcReference" and its subclasses |
| Rm-method | Class "actionItem" |
| Rm-method | Class "compensateActionItem" |
| Rm-method | Class "compensateView" |
| Rm-method | Class "fcReference" and its subclasses |
| Rm-method | Class "gateActionItem" |
| Rm-method | Class "gateView" |
| Rm-method | Class "normalizeActionItem" |
| Rm-method | Class "normalizeView" |
| Rm-method | Class "subsettingActionItem" |
| Rm-method | Class "subsettingView" |
| Rm-method | Class "transformActionItem" |
| Rm-method | Class "transformView" |
| Rm-method | Class "view" |
| Rm-method | Class "workFlow" |
| sampleFilter | Class "sampleFilter" |
| sampleFilter-class | Class "sampleFilter" |
| sampleNames-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| sampleNames<--method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| scaleTransform | Create the definition of a scale transformation function to be applied on a data set |
| setOperationFilter-class | Class "setOperationFilter" |
| show-method | Class "boundaryFilter" |
| show-method | Class "compensateActionItem" |
| show-method | Class "compensation" |
| show-method | Class "curv1Filter" |
| show-method | Class "curv2Filter" |
| show-method | Class "ellipsoidGate" |
| show-method | Class "expressionFilter" |
| show-method | Class "fcReference" and its subclasses |
| show-method | Filter FCS files |
| show-method | Class "filterList" |
| show-method | Class filterReference |
| show-method | Class "filterResult" |
| show-method | Class "filterResultList" |
| show-method | Class filterSet |
| show-method | Class "filterSummary" |
| show-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| show-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| show-method | Class "gateActionItem" |
| show-method | Class "kmeansFilter" |
| show-method | Class "manyFilterResult" |
| show-method | Class "multipleFilterResult" |
| show-method | Class "norm2Filter" |
| show-method | Class "normalizeActionItem" |
| show-method | Class "polygonGate" |
| show-method | Define filter boundaries |
| show-method | Class "quadGate" |
| show-method | Class "rectangleGate" |
| show-method | Class "sampleFilter" |
| show-method | Class "setOperationFilter" |
| show-method | Class "subsetting" |
| show-method | Class "subsettingActionItem" |
| show-method | Class "timeFilter" |
| show-method | 'transform': a class for transforming flow-cytometry data by applying scale factors. |
| show-method | Class "transformActionItem" |
| show-method | A class for encapsulating a filter to be performed on transformed parameters |
| show-method | A class for mapping transforms between parameters |
| show-method | Class "unitytransform" |
| show-method | Class "view" |
| show-method | Class "workFlow" |
| singleParameterTransform-class | Class "singleParameterTransform" |
| sinht | Class "sinht" |
| sinht-class | Class "sinht" |
| sort-method | Class filterSet |
| spillover | Compute a spillover matrix from a flowSet |
| spillover-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| spillover-method | Compute a spillover matrix from a flowSet |
| split | Methods to split flowFrames and flowSets according to filters |
| split-method | Class "filterResultList" |
| split-method | Methods to split flowFrames and flowSets according to filters |
| split-methods | Methods to split flowFrames and flowSets according to filters |
| splitscale | Class "splitscale" |
| splitscale-class | Class "splitscale" |
| splitScaleTransform | Compute the split-scale transformation describe by FL. Battye |
| squareroot | Class "squareroot" |
| squareroot-class | Class "squareroot" |
| Subset | Subset a flowFrame or a flowSet |
| Subset,flowSet,ANY | Subset a flowFrame or a flowSet |
| Subset-method | Subset a flowFrame or a flowSet |
| subsetFilter-class | Class "setOperationFilter" |
| subsetFilter-method | Take the intersection of two filters |
| subsetting | Class "subsetting" |
| subsetting-class | Class "subsetting" |
| subsettingActionItem | Class "subsettingActionItem" |
| subsettingActionItem-class | Class "subsettingActionItem" |
| subsettingView | Class "subsettingView" |
| subsettingView-class | Class "subsettingView" |
| summarizeFilter | Methods for function summarizeFilter |
| summarizeFilter-method | Methods for function summarizeFilter |
| summarizeFilter-methods | Methods for function summarizeFilter |
| summary | Class "filterSummary" |
| summary-method | Filter FCS files |
| summary-method | Class filterReference |
| summary-method | Class "filterResult" |
| summary-method | Class "filterResultList" |
| summary-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| summary-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| summary-method | Class "gateActionItem" |
| summary-method | Class "gateView" |
| summary-method | Class "logicalFilterResult" |
| summary-method | Class "manyFilterResult" |
| summary-method | Class "multipleFilterResult" |
| summary-method | Class "rectangleGate" |
| summary-method | Class "setOperationFilter" |
| summary-method | 'transform': a class for transforming flow-cytometry data by applying scale factors. |
| summary-method | Class "workFlow" |
| tail-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| timeFilter | Class "timeFilter" |
| timeFilter-class | Class "timeFilter" |
| toTable | Class "filterSummary" |
| toTable-method | Class "filterSummary" |
| toTable-method | Class "filterSummaryList" |
| transform | 'transform': a class for transforming flow-cytometry data by applying scale factors. |
| transform-class | 'transform': a class for transforming flow-cytometry data by applying scale factors. |
| transform-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| transform-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| transform-method | 'transform': a class for transforming flow-cytometry data by applying scale factors. |
| transformActionItem | Class "transformActionItem" |
| transformActionItem-class | Class "transformActionItem" |
| transformation-class | Class "transformation" |
| transformFilter | A class for encapsulating a filter to be performed on transformed parameters |
| transformFilter-class | A class for encapsulating a filter to be performed on transformed parameters |
| transformList | Class "transformList" |
| transformList-class | Class "transformList" |
| transformMap | A class for mapping transforms between parameters |
| transformMap-class | A class for mapping transforms between parameters |
| transformReference | Class "transformReference" |
| transformReference-class | Class "transformReference" |
| transformView | Class "transformView" |
| transformView-class | Class "transformView" |
| tree | Class "workFlow" |
| tree-method | Class "workFlow" |
| truncateTransform | Create the definition of a truncate transformation function to be applied on a data set |
| undo | Class "workFlow" |
| unionFilter-class | Class "setOperationFilter" |
| unitytransform | Class "unitytransform" |
| unitytransform-class | Class "unitytransform" |
| varLabels-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| varLabels<--method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| varMetadata-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| varMetadata<--method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| view | Class "view" |
| view-class | Class "view" |
| views | Class "workFlow" |
| views-method | Class "workFlow" |
| workFlow | Class "workFlow" |
| workFlow-class | Class "workFlow" |
| write.FCS | Write an FCS file |
| write.flowSet | Write an FCS file |
| xyplot-method | Class "gateView" |
| xyplot-method | Class "view" |
| !-method | A class for representing filtering operations to be applied to flow data. |
| $-method | Class "filterSummary" |
| $-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| $-method | Class "workFlow" |
| $.flowFrame | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| %&% | Take the intersection of two filters |
| %&%-method | Take the intersection of two filters |
| %&%-methods | Take the intersection of two filters |
| %in% | Filter-specific membership methods |
| %in%-method | Filter-specific membership methods |
| %in%-methods | Filter-specific membership methods |
| %on% | Methods for Function %on% in Package 'flowCore' |
| %on%-method | Methods for Function %on% in Package 'flowCore' |
| %on%-methods | Methods for Function %on% in Package 'flowCore' |
| %subset% | Take the intersection of two filters |
| %subset%-method | Take the intersection of two filters |
| %subset%-method | Class filterSet |
| &-method | Take the intersection of two filters |
| *-method | Class "rectangleGate" |
| <-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| <=-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| ==-method | Class "filterResult" |
| ==-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| >-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| >=-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| [-method | Class "filterResultList" |
| [-method | Class filterSet |
| [-method | 'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
| [-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| [-method | Class "multipleFilterResult" |
| [-method | Class "rectangleGate" |
| [-method | Class "workFlow" |
| [[-method | Class "filterResult" |
| [[-method | Class "filterResultList" |
| [[-method | Class filterSet |
| [[-method | Class "filterSummary" |
| [[-method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| [[-method | Class "logicalFilterResult" |
| [[-method | Class "manyFilterResult" |
| [[-method | Class "multipleFilterResult" |
| [[-method | Class "workFlow" |
| [[<-,filterSet,missing,ANY,filter | Class filterSet |
| [[<--method | Class filterSet |
| [[<--method | 'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
| |-method | A class for representing filtering operations to be applied to flow data. |