segmentSeq-package |
Segmentation of the genome based on multiple samples of high-throughput |
alignmentData |
Class "alignmentData" |
alignmentData-class |
Class "alignmentData" |
dim-method |
Class "alignmentData" |
dim-method |
Class "segData" |
filterSegments |
Filters an set of segments (given an ordering on the segments) such |
getCounts |
Gets counts from alignment data from a set of genome segments. |
getPriors |
Finds a set of priors for a 'segData' object. |
initialize-method |
Class "alignmentData" |
initialize-method |
Class "segData" |
plotGenome |
Plots the alignment of sequence tags on the genome given an |
processAD |
Processes an 'alignmentData' object into a 'segData' object for |
processTags |
Convenience function for processing tab-delimited files in a certain |
segData-class |
Class "segData" |
segmentSeq |
Segmentation of the genome based on multiple samples of high-throughput |
show-method |
Class "alignmentData" |
show-method |
Class "segData" |
similaritySeg |
Takes the 'segData' object and uses it to define segments on the |
SL10 |
Example data selected from a set of Illumina sequencing experiments. |
SL26 |
Example data selected from a set of Illumina sequencing experiments. |
SL32 |
Example data selected from a set of Illumina sequencing experiments. |
SL9 |
Example data selected from a set of Illumina sequencing experiments. |
[-method |
Class "alignmentData" |
[-method |
Class "segData" |