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| align | Class "align" |
| align-class | Class "align" |
| consensus | Class "gadem" |
| consensus-method | Class "gadem" |
| dim-method | Class "gadem" |
| endPos | Class "gadem" |
| endPos-method | Class "gadem" |
| GADEM | Motif Analysis with rGADEM |
| gadem | Class "gadem" |
| gadem-class | Class "gadem" |
| getPWM | Class "gadem" |
| getPWM-method | Class "gadem" |
| length-method | Class "gadem" |
| motif | Class "motif" |
| motif-class | Class "motif" |
| names-method | Class "gadem" |
| names<--method | Class "gadem" |
| nMotifs | Class "motif" |
| nMotifs-method | Class "gadem" |
| nOccurrences | Class "gadem" |
| nOccurrences-method | Class "gadem" |
| parameters | Class "parameters" |
| parameters-class | Class "parameters" |
| parameters-method | Class "gadem" |
| plot | Class "gadem" |
| plot-method | Class "gadem" |
| readPWMfile | Read Transfac File |
| startPos | Class "gadem" |
| startPos-method | Class "gadem" |
| summary-method | Class "gadem" |
| [-method | Class "gadem" |
| [[-method | Class "gadem" |