coloredGraph-class | Class "coloredGraph" |
colorNodes | attach node coloring information to a graphNEL instance |
colorNodes-method | attach node coloring information to a graphNEL instance |
graphcMAP | obtain a graph object corresponding to a cMAP pathway |
plot-method | Class "coloredGraph" |
plot-method | Class "pwayGraph" - extension to graphNEL for pathway rendering |
plotExGraph | plot a gene network, coloring nodes according to relative expression |
pwayGraph-class | Class "pwayGraph" - extension to graphNEL for pathway rendering |
pwayRendAttrs | Class "coloredGraph" |
reduceES | collapse the assay values in an ExpressionSet to a set of specified |
rendercMAPPathway | Render pathways from cMAP |