Graph Theoretic Association Tests

Documentation for package ‘GraphAT’ version 1.22.0

causton	Yeast mRNA Expression Data
ccCM	Cell-Cycle Cluster Matrix
clust2Mat	Function to compute adjacency matrix of cluster graph given a vector of
depthmatBP	Matrices of depth of association for pairs of YEAST genes with respect
depthmatCC	Matrices of depth of association for pairs of YEAST genes with respect
depthmatMF	Matrices of depth of association for pairs of YEAST genes with respect
getpvalue	Function to obtain P values from the Edge permutation and Node
giaever	Yeast Gene-Knockout Fitness Data
makeClustM	Make an adjacency matrix for a cluster graph
mat2UndirG	Change graph representations
mRNAclusters	Yeast mRNA Expression Data Cluster Memberships
nNamescc	Cell-Cycle Cluster Matrix
permEdgesM2M	Randomly permute edges or node labels in a graph
permNodesM2M	Randomly permute edges or node labels in a graph
permPower	Function to compute estimated probability of detecting preferential
Phenoclusters	Yeast Gene-Knockout Fitness Data Cluster Memberships