ALLs.chr22 |
Chromosome 22 subset of ALL data for ALL1/AF4 and E2A/PBX1 |
annotation-method |
Class to contain data associated with chromosome coordinates across a |
chrdata |
The ALLs.chr22 ExpressionSet, reformatted as a ChrStrandData object |
chrHeatMap |
Plot ChrStrandMatrix objects as heat maps along a chromosome |
ChrMapPlot |
Class containing a mapping between plot location and probe or gene |
ChrMapPlot-class |
Class containing a mapping between plot location and probe or gene |
chrNames |
Retrieve chromosome names from an object. |
chrNames-method |
Class to contain data associated with chromosome coordinates across a |
chrNames-method |
Class to contain data associated with genome locations for a specific |
ChrStrandData |
Class to contain data associated with chromosome coordinates across a |
ChrStrandData-class |
Class to contain data associated with chromosome coordinates across a |
ChrStrandMatrix |
Class to contain data associated with genome locations for a specific |
ChrStrandMatrix-class |
Class to contain data associated with genome locations for a specific |
class:ChrMapPlot |
Class containing a mapping between plot location and probe or gene |
class:ChrStrandData |
Class to contain data associated with chromosome coordinates across a |
class:ChrStrandMatrix |
Class to contain data associated with genome locations for a specific |
createChrMatrix |
Generate chromosome-based subset matrices from the mapped data |
cytobands |
Cytoband location information |
drawMapDendro |
Draw a heatmap and dendrogram for a strand-specific data matrix |
exprs-method |
Class to contain data associated with genome locations for a specific |
featureNames-method |
Class to contain data associated with genome locations for a specific |
grabChrMapProbes |
Identify the probes or genes plotted using plotChrMap |
makeChrStrandData |
Map a data matrix onto chromosome coordinates |
makeChrStrandData-method |
Map a data matrix onto chromosome coordinates |
makeChrStrandData-methods |
Map a data matrix onto chromosome coordinates |
makeRangedDataList |
Plot expression data as tracks in the UCSC genome browser |
plotChrMap |
Plot data as an annotated heat map along a chromosome |
sampleNames-method |
Class to contain data associated with chromosome coordinates across a |
sampleNames-method |
Class to contain data associated with genome locations for a specific |
show-method |
Class containing a mapping between plot location and probe or gene |
show-method |
Class to contain data associated with chromosome coordinates across a |
show-method |
Class to contain data associated with genome locations for a specific |
stains |
Cytoband display information |
strandName |
Retrieve strand information from a ChrStrandMatrix object. |
strandName-method |
Class to contain data associated with genome locations for a specific |
summary-method |
Class containing a mapping between plot location and probe or gene |
summary-method |
Class to contain data associated with chromosome coordinates across a |
summary-method |
Class to contain data associated with genome locations for a specific |