Convert segment data into a region by sample matrix to allow for other high level computational analyses.

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Documentation for package ‘CNTools’ version 1.6.0

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CNSeg Class "CNSeg" contains the output of DNACopy segmentation data that can
CNSeg-class Class "CNSeg" contains the output of DNACopy segmentation data that can
diffBy A filter that filters out features that do not differ by a set
diffBy-method A filter that filters out features that do not differ by a set
genefilter-method A method that filters feature based on reduced segment
genefilter-methods A method that filters feature based on reduced segment
geneInfo method that convert segment data into reduced segment matrix
getCor Method that extends the cor function of stats to handle reduced segment
getCor-method Method that extends the cor function of stats to handle reduced segment
getDist A method that extends the generic function dist to handle reduced
getDist-method A method that extends the generic function dist to handle reduced
getRS method that convert segment data into reduced segment matrix
getRS-method method that convert segment data into reduced segment matrix
madFilter Method that filters reduced segment matrix by the mean absolute
madFilter-method Method that filters reduced segment matrix by the mean absolute
rs Class "RS" contains the Reduced Segment data matrix derived from the
RS-class Class "RS" contains the Reduced Segment data matrix derived from the
rs-method Class "RS" contains the Reduced Segment data matrix derived from the
rs<- Class "RS" contains the Reduced Segment data matrix derived from the
rs<--method Class "RS" contains the Reduced Segment data matrix derived from the
sampleData Class "CNSeg" contains the output of DNACopy segmentation data that can
segBy Class "RS" contains the Reduced Segment data matrix derived from the
segBy-method Class "RS" contains the Reduced Segment data matrix derived from the
segList Class "CNSeg" contains the output of DNACopy segmentation data that can
segList-method Class "CNSeg" contains the output of DNACopy segmentation data that can
segList<- Class "CNSeg" contains the output of DNACopy segmentation data that can
segList<--method Class "CNSeg" contains the output of DNACopy segmentation data that can
show-method Class "CNSeg" contains the output of DNACopy segmentation data that can
show-method Class "RS" contains the Reduced Segment data matrix derived from the