Package authors should develop against the version of R that will be available to users when the Bioconductor devel branch becomes the Bioconductor release branch.
R has a ‘.y’ release in x.y.z every year, but Bioconductor has a .y release (where current devel becomes release) every 6 months.
When the next (typically mid-April) .y releases of R and Bioconductor coincide, Bioc-devel is based on R-devel.
When the next (typically mid-October) .y release of Bioconductor corresponds to no change in R’s y, Bioc-devel is based on release R.
This means that, from mid-October through mid-April, Bioconductor developers should be developing against R-devel. From mid-April to mid-October, developers should use R-release (actually, the R snapshot from the R-x-y-branch) for Bioconductor development.
In order to use the
devel version of Bioconductor during the current
release cycle, you must install
remove.packages("BiocInstaller") # repeat until R says there is no # package 'BiocInstaller' to remove source("https://bioconductor.org/biocLite.R") # install correct version BiocInstaller::biocValid()